Linux服務(wù)器安裝fastp，Hisat2, samtools和Htseq

source ~/miniconda3/bin/activate
conda install fastp hisat2 htseq samtools

Channels:
 - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
 - defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: | warning  libmamba Added empty dependency for problem type SOLVER_RULE_UPDATE
failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - nothing provides python_abi 3.6.* *_cp36m needed by htseq-0.12.3-py36hb3f55d8_0

Could not solve for environment specs
The following packages are incompatible
├─ htseq is installable with the potential options
│  ├─ htseq [0.11.0|0.11.1|...|0.9.1] would require
│  │  └─ python [2.7* |>=2.7,<2.8.0a0 ], which can be installed;
│  ├─ htseq [0.11.0|0.11.1|0.11.2|0.7.2|0.9.1] would require
│  │  └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed;
│  ├─ htseq [0.11.0|0.11.1|...|0.9.1] would require
│  │  └─ python [3.6* |>=3.6,<3.7.0a0 ], which can be installed;
│  ├─ htseq [0.11.2|0.11.3] would require
│  │  └─ python >=3.7,<3.8.0a0 , which can be installed;
│  ├─ htseq [0.12.3|0.12.4|0.13.5|0.7.2|0.9.1] would require
│  │  └─ python_abi 3.6.* *_cp36m, which does not exist (perhaps a missing channel);
│  ├─ htseq [0.12.3|0.12.4|...|2.0.1] would require
│  │  └─ python_abi 3.7.* *_cp37m, which does not exist (perhaps a missing channel);
│  ├─ htseq [0.12.4|0.13.5|...|2.0.1] would require
│  │  └─ python_abi 3.8.* *_cp38, which does not exist (perhaps a missing channel);
│  ├─ htseq [0.13.5|1.99.2|2.0.1] would require
│  │  └─ python_abi 3.9.* *_cp39, which does not exist (perhaps a missing channel);
│  ├─ htseq 0.6.1 would require
│  │  └─ matplotlib 1.2.1 , which does not exist (perhaps a missing channel);
│  ├─ htseq [0.6.1|0.6.1.post1|0.7.2|0.9.1] would require
│  │  └─ python_abi 2.7.* *_cp27mu, which does not exist (perhaps a missing channel);
│  ├─ htseq 0.7.2 would require
│  │  └─ python 3.4* , which does not exist (perhaps a missing channel);
│  └─ htseq [2.0.2|2.0.3|2.0.4|2.0.5] would require
│     └─ libgcc-ng >=12 , which does not exist (perhaps a missing channel);
└─ pin-1 is not installable because it requires
   └─ python 3.9.* , which conflicts with any installable versions previously reported.

conda search htseq

Loading channels: done
# Name                       Version           Build  Channel             
htseq                        0.6.1p1          py27_0  anaconda/cloud/bioconda
htseq                        0.6.1p1          py27_1  anaconda/cloud/bioconda
htseq                          0.6.1      np17py27_0  anaconda/cloud/bioconda
htseq                          0.6.1          py27_1  anaconda/cloud/bioconda
htseq                          0.6.1  py27h470a237_2  anaconda/cloud/bioconda
htseq                          0.6.1  py27h76bc9d7_4  anaconda/cloud/bioconda
htseq                          0.6.1  py27hfd4ddd4_3  anaconda/cloud/bioconda
htseq                    0.6.1.post1  py27h76bc9d7_5  anaconda/cloud/bioconda
htseq                    0.6.1.post1  py27hfd4ddd4_4  anaconda/cloud/bioconda
htseq                          0.7.2          py27_0  anaconda/cloud/bioconda
htseq                          0.7.2  py27h24bf2e0_1  anaconda/cloud/bioconda
htseq                          0.7.2  py27h76bc9d7_4  anaconda/cloud/bioconda
htseq                          0.7.2  py27h7eb728f_2  anaconda/cloud/bioconda
htseq                          0.7.2  py27hfd4ddd4_3  anaconda/cloud/bioconda
htseq                          0.7.2          py34_0  anaconda/cloud/bioconda
htseq                          0.7.2          py35_0  anaconda/cloud/bioconda
htseq                          0.7.2  py35h24bf2e0_1  anaconda/cloud/bioconda
htseq                          0.7.2  py35h7eb728f_2  anaconda/cloud/bioconda
htseq                          0.7.2          py36_0  anaconda/cloud/bioconda
htseq                          0.7.2  py36h0234e80_4  anaconda/cloud/bioconda
htseq                          0.7.2  py36h24bf2e0_1  anaconda/cloud/bioconda
htseq                          0.7.2  py36h39af1c6_3  anaconda/cloud/bioconda
htseq                          0.7.2  py36h7eb728f_2  anaconda/cloud/bioconda
htseq                          0.7.2  py37h0498b6d_4  anaconda/cloud/bioconda
htseq                          0.7.2  py37h70f9b12_3  anaconda/cloud/bioconda
htseq                          0.7.2  py38h1773678_4  anaconda/cloud/bioconda
htseq                          0.9.1          py27_0  anaconda/cloud/bioconda
htseq                          0.9.1  py27h24bf2e0_1  anaconda/cloud/bioconda
htseq                          0.9.1  py27h76bc9d7_4  anaconda/cloud/bioconda
htseq                          0.9.1  py27h7eb728f_2  anaconda/cloud/bioconda
htseq                          0.9.1  py27hfd4ddd4_3  anaconda/cloud/bioconda
htseq                          0.9.1          py35_0  anaconda/cloud/bioconda
htseq                          0.9.1  py35h24bf2e0_1  anaconda/cloud/bioconda
htseq                          0.9.1  py35h7eb728f_2  anaconda/cloud/bioconda
htseq                          0.9.1          py36_0  anaconda/cloud/bioconda
htseq                          0.9.1  py36h0234e80_4  anaconda/cloud/bioconda
htseq                          0.9.1  py36h24bf2e0_1  anaconda/cloud/bioconda
htseq                          0.9.1  py36h39af1c6_3  anaconda/cloud/bioconda
htseq                          0.9.1  py36h7eb728f_2  anaconda/cloud/bioconda
htseq                          0.9.1  py37h0498b6d_4  anaconda/cloud/bioconda
htseq                          0.9.1  py37h70f9b12_3  anaconda/cloud/bioconda
htseq                          0.9.1  py38h1773678_4  anaconda/cloud/bioconda
htseq                         0.11.0  py27h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.0  py27h7eb728f_1  anaconda/cloud/bioconda
htseq                         0.11.0  py35h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.0  py35h7eb728f_1  anaconda/cloud/bioconda
htseq                         0.11.0  py36h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.0  py36h7eb728f_1  anaconda/cloud/bioconda
htseq                         0.11.1  py27h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.1  py35h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.1  py36h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.2  py27h637b7d7_1  anaconda/cloud/bioconda
htseq                         0.11.2  py27h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.2  py35h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.2  py36h637b7d7_1  anaconda/cloud/bioconda
htseq                         0.11.2  py36h7eb728f_0  anaconda/cloud/bioconda
htseq                         0.11.2  py37h637b7d7_1  anaconda/cloud/bioconda
htseq                         0.11.3  py27hb3f55d8_0  anaconda/cloud/bioconda
htseq                         0.11.3  py36hb3f55d8_0  anaconda/cloud/bioconda
htseq                         0.11.3  py37hb3f55d8_0  anaconda/cloud/bioconda
htseq                         0.12.3  py36hb3f55d8_0  anaconda/cloud/bioconda
htseq                         0.12.3  py37hb3f55d8_0  anaconda/cloud/bioconda
htseq                         0.12.4  py36h0234e80_2  anaconda/cloud/bioconda
htseq                         0.12.4  py36h39af1c6_1  anaconda/cloud/bioconda
htseq                         0.12.4  py36hb3f55d8_0  anaconda/cloud/bioconda
htseq                         0.12.4  py37h0498b6d_2  anaconda/cloud/bioconda
htseq                         0.12.4  py37h70f9b12_1  anaconda/cloud/bioconda
htseq                         0.12.4  py37hb3f55d8_0  anaconda/cloud/bioconda
htseq                         0.12.4  py38h1773678_2  anaconda/cloud/bioconda
htseq                         0.13.5  py36h0234e80_0  anaconda/cloud/bioconda
htseq                         0.13.5  py36h7d1f7ee_1  anaconda/cloud/bioconda
htseq                         0.13.5  py37h0498b6d_0  anaconda/cloud/bioconda
htseq                         0.13.5  py37h9c5868f_1  anaconda/cloud/bioconda
htseq                         0.13.5  py38h1773678_0  anaconda/cloud/bioconda
htseq                         0.13.5  py38h803c66d_1  anaconda/cloud/bioconda
htseq                         0.13.5  py39h70b41aa_1  anaconda/cloud/bioconda
htseq                         1.99.2  py37h9c5868f_1  anaconda/cloud/bioconda
htseq                         1.99.2  py37hfcd875c_2  anaconda/cloud/bioconda
htseq                         1.99.2  py38h7a2e8c7_2  anaconda/cloud/bioconda
htseq                         1.99.2  py38h803c66d_1  anaconda/cloud/bioconda
htseq                         1.99.2  py38hacaa69e_0  anaconda/cloud/bioconda
htseq                         1.99.2  py39h70b41aa_1  anaconda/cloud/bioconda
htseq                         1.99.2  py39h919a90d_2  anaconda/cloud/bioconda
htseq                         1.99.2  py39haf81c86_0  anaconda/cloud/bioconda
htseq                          2.0.1  py37hfcd875c_0  anaconda/cloud/bioconda
htseq                          2.0.1  py38h7a2e8c7_0  anaconda/cloud/bioconda
htseq                          2.0.1  py39h919a90d_0  anaconda/cloud/bioconda
htseq                          2.0.2 py310h5aa3a86_1  anaconda/cloud/bioconda
htseq                          2.0.2 py310ha14a713_0  anaconda/cloud/bioconda
htseq                          2.0.2  py37hfcd875c_0  anaconda/cloud/bioconda
htseq                          2.0.2  py38h7a2e8c7_0  anaconda/cloud/bioconda
htseq                          2.0.2  py38h8c35140_1  anaconda/cloud/bioconda
htseq                          2.0.2  py39h919a90d_0  anaconda/cloud/bioconda
htseq                          2.0.2  py39hd5189a5_1  anaconda/cloud/bioconda
htseq                          2.0.3 py310h5aa3a86_1  anaconda/cloud/bioconda
htseq                          2.0.3 py310ha14a713_0  anaconda/cloud/bioconda
htseq                          2.0.3  py37hfcd875c_0  anaconda/cloud/bioconda
htseq                          2.0.3  py38h7a2e8c7_0  anaconda/cloud/bioconda
htseq                          2.0.3  py38h8c35140_1  anaconda/cloud/bioconda
htseq                          2.0.3  py39h919a90d_0  anaconda/cloud/bioconda
htseq                          2.0.3  py39hd5189a5_1  anaconda/cloud/bioconda
htseq                          2.0.4 py310h5aa3a86_0  anaconda/cloud/bioconda
htseq                          2.0.4  py38h8c35140_0  anaconda/cloud/bioconda
htseq                          2.0.4  py39hd5189a5_0  anaconda/cloud/bioconda
htseq                          2.0.5 py310h24e864b_2  anaconda/cloud/bioconda
htseq                          2.0.5 py310h5aa3a86_0  anaconda/cloud/bioconda
htseq                          2.0.5 py310h5aa3a86_1  anaconda/cloud/bioconda
htseq                          2.0.5 py311h346d907_2  anaconda/cloud/bioconda
htseq                          2.0.5 py312h8cd533b_2  anaconda/cloud/bioconda
htseq                          2.0.5  py38h38ace90_2  anaconda/cloud/bioconda
htseq                          2.0.5  py38h8c35140_0  anaconda/cloud/bioconda
htseq                          2.0.5  py38h8c35140_1  anaconda/cloud/bioconda
htseq                          2.0.5  py39h91a4a08_2  anaconda/cloud/bioconda
htseq                          2.0.5  py39hd5189a5_0  anaconda/cloud/bioconda
htseq                          2.0.5  py39hd5189a5_1  anaconda/cloud/bioconda

conda create -n pyht
conda activate pyht
conda install htseq fastp hisat2

cd /work/home/acwnw4bl7y/HT22/HT22
export PATH=/work/home/acwnw4bl7y/sratoolkit.3.1.1-centos_linux64/bin/:$PATH
source ~/miniconda3/bin/activate
conda activate pyht

最后編輯于：2024.10.18 16:13:47

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Linux服務(wù)器安裝fastp嘀略，Hisat2, samtools和Htseq

Linux服務(wù)器安裝fastp，Hisat2, samtools和Htseq

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