基因組對(duì)應(yīng)關(guān)系:
1.UCSC:
table-browser:https://genome.ucsc.edu/cgi-bin/hgTables
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總ftp:ftp://hgdownload.soe.ucsc.edu/goldenPath
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web-human:http://hgdownload.cse.ucsc.edu/downloads.html#human
ftp-hg38:ftp://hgdownload.soe.ucsc.edu/goldenPath/hg38/
ftp-hg19:ftp://hgdownload.soe.ucsc.edu/goldenPath/hg19/
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ftp-mm10:?ftp://hgdownload.soe.ucsc.edu/goldenPath/mm10/
ftp-mm9:ftp://hgdownload.soe.ucsc.edu/goldenPath/mm9/
web-mouse:?http://hgdownload.cse.ucsc.edu/downloads.html#mouse
2.Ensembl:
web:https://www.ensembl.org/info/data/ftp/index.html
ftp:ftp://ftp.ensembl.org/pub/
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ftp-release94-GRCh38-fa:ftp://ftp.ensembl.org/pub/release-94/fasta/homo_sapiens/
ftp-release94-GRCh38-gtf:ftp://ftp.ensembl.org/pub/release-94/gtf/homo_sapiens/
ftp-release94-GRCh38-gff3:ftp://ftp.ensembl.org/pub/release-94/gff3/homo_sapiens/
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ftp-release94-GRCm38-fa: ftp://ftp.ensembl.org/pub/release-94/fasta/mus_musculus/
ftp-release94-GRCm38-gtf: ftp://ftp.ensembl.org/pub/release-94/gtf/mus_musculus/
ftp-release94-GRCm38-gff3:ftp://ftp.ensembl.org/pub/release-94/gtf/mus_musculus/
3.Gencode:
web-mouse-GRCm38: https://www.gencodegenes.org/mouse/
web-human-GRCh37:?https://www.gencodegenes.org/human/release_29lift37.html
ftp-gencode:?ftp://ftp.ebi.ac.uk/pub/databases/gencode
4.NCBI:
human: ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/
mouse:?ftp://ftp.ncbi.nih.gov/genomes/M_musculus/
NCBI的注釋文件只有g(shù)ff3