| All gene sets | current MSigDB gene sets as Gene Symbols | msigdb.v7.4.symbols.gmt |
| current MSigDB gene sets as NCBI (Entrez) Gene IDs | msigdb.v7.4.entrez.gmt |
| current MSigDB xml file | msigdb_v7.4.xml |
| h: hallmark gene sets | hallmark gene sets as Gene Symbols | h.all.v7.4.symbols.gmt |
| hallmark gene sets as NCBI (Entrez) Gene IDs | h.all.v7.4.entrez.gmt |
| c1: positional gene sets | positional gene sets as Gene Symbols | c1.all.v7.4.symbols.gmt |
| positional gene sets as NCBI (Entrez) Gene IDs | c1.all.v7.4.entrez.gmt |
| c2: curated gene sets | all curated gene sets as Gene Symbols | c2.all.v7.4.symbols.gmt |
| all curated gene sets as NCBI (Entrez) Gene IDs | c2.all.v7.4.entrez.gmt |
| chemical and genetic perturbations as Gene Symbols | c2.cgp.v7.4.symbols.gmt |
| chemical and genetic perturbations as NCBI (Entrez) Gene IDs | c2.cgp.v7.4.entrez.gmt |
| all canonical pathways as Gene Symbols | c2.cp.v7.4.symbols.gmt |
| all canonical pathways as NCBI (Entrez) Gene IDs | c2.cp.v7.4.entrez.gmt |
| BioCarta gene sets as Gene Symbols | c2.cp.biocarta.v7.4.symbols.gmt |
| BioCarta gene sets as NCBI (Entrez) Gene IDs | c2.cp.biocarta.v7.4.entrez.gmt |
| KEGG gene sets as Gene Symbols | c2.cp.kegg.v7.4.symbols.gmt |
| KEGG gene sets as NCBI (Entrez) Gene IDs | c2.cp.kegg.v7.4.entrez.gmt |
| PID gene sets as Gene Symbols | c2.cp.pid.v7.4.symbols.gmt |
| PID gene sets as NCBI (Entrez) Gene IDs | c2.cp.pid.v7.4.entrez.gmt |
| Reactome gene sets as Gene Symbols | c2.cp.reactome.v7.4.symbols.gmt |
| Reactome gene sets as NCBI (Entrez) Gene IDs | c2.cp.reactome.v7.4.entrez.gmt |
| WikiPathways gene sets as Gene Symbols | c2.cp.wikipathways.v7.4.symbols.gmt |
| WikiPathways gene sets as NCBI (Entrez) Gene IDs | c2.cp.wikipathways.v7.4.entrez.gmt |
| c3: regulatory target gene sets | all regulatory target gene sets as Gene Symbols | c3.all.v7.4.symbols.gmt |
| all regulatory target gene sets as NCBI (Entrez) Gene IDs | c3.all.v7.4.entrez.gmt |
| all microRNA targets as Gene Symbols | c3.mir.v7.4.symbols.gmt |
| all microRNA targets as NCBI (Entrez) Gene IDs | c3.mir.v7.4.entrez.gmt |
| MIRDB targets as Gene Symbols | c3.mir.mirdb.v7.4.symbols.gmt |
| MIRDB targets as NCBI (Entrez) Gene IDs | c3.mir.mirdb.v7.4.entrez.gmt |
| legacy microRNA targets as Gene Symbols | c3.mir.mir_legacy.v7.4.symbols.gmt |
| legacy microRNA targets as NCBI (Entrez) Gene IDs | c3.mir.mir_legacy.v7.4.entrez.gmt |
| all transcription factor targets as Gene Symbols | c3.tft.v7.4.symbols.gmt |
| all transcription factor targets as NCBI (Entrez) Gene IDs | c3.tft.v7.4.entrez.gmt |
| GTRD targets as Gene Symbols | c3.tft.gtrd.v7.4.symbols.gmt |
| GTRD targets as NCBI (Entrez) Gene IDs | c3.tft.gtrd.v7.4.entrez.gmt |
| legacy transcription factor targets as Gene Symbols | c3.tft.tft_legacy.v7.4.symbols.gmt |
| legacy transcription factor targets as NCBI (Entrez) Gene IDs | c3.tft.tft_legacy.v7.4.entrez.gmt |
| c4: computational gene sets | all computational gene sets as Gene Symbols | c4.all.v7.4.symbols.gmt |
| all computational gene sets as NCBI (Entrez) Gene IDs | c4.all.v7.4.entrez.gmt |
| cancer gene neighborhoods as Gene Symbols | c4.cgn.v7.4.symbols.gmt |
| cancer gene neighborhoods as NCBI (Entrez) Gene IDs | c4.cgn.v7.4.entrez.gmt |
| cancer modules as Gene Symbols | c4.cm.v7.4.symbols.gmt |
| cancer modules as NCBI (Entrez) Gene IDs | c4.cm.v7.4.entrez.gmt |
| c5: Ontology gene sets | all Ontology gene sets as Gene Symbols | c5.all.v7.4.symbols.gmt |
| all Ontology gene sets as NCBI (Entrez) Gene IDs | c5.all.v7.4.entrez.gmt |
| all GO gene sets as Gene Symbols | c5.go.v7.4.symbols.gmt |
| all GO gene sets as NCBI (Entrez) Gene IDs | c5.go.v7.4.entrez.gmt |
| GO biological processes as Gene Symbols | c5.go.bp.v7.4.symbols.gmt |
| GO biological processes as NCBI (Entrez) Gene IDs | c5.go.bp.v7.4.entrez.gmt |
| GO cellular components as Gene Symbols | c5.go.cc.v7.4.symbols.gmt |
| GO cellular components as NCBI (Entrez) Gene IDs | c5.go.cc.v7.4.entrez.gmt |
| GO molecular functions as Gene Symbols | c5.go.mf.v7.4.symbols.gmt |
| GO molecular functions as NCBI (Entrez) Gene IDs | c5.go.mf.v7.4.entrez.gmt |
| Human Phenotype Ontology as Gene Symbols | c5.hpo.v7.4.symbols.gmt |
| Human Phenotype Ontology as NCBI (Entrez) Gene IDs | c5.hpo.v7.4.entrez.gmt |
| c6: oncogenic signature gene sets | all oncogenic signature gene sets as Gene Symbols | c6.all.v7.4.symbols.gmt |
| all oncogenic signature gene sets as NCBI (Entrez) Gene IDs | c6.all.v7.4.entrez.gmt |
| c7: immunologic signature gene sets | all immunologic signature gene sets as Gene Symbols | c7.all.v7.4.symbols.gmt |
| all immunologic signature gene sets as NCBI (Entrez) Gene IDs | c7.all.v7.4.entrez.gmt |
| ImmuneSigDB gene sets as Gene Symbols | c7.immunesigdb.v7.4.symbols.gmt |
| ImmuneSigDB gene sets as NCBI (Entrez) Gene IDs | c7.immunesigdb.v7.4.entrez.gmt |
| vaccine response gene sets as Gene Symbols | c7.vax.v7.4.symbols.gmt |
| vaccine response gene sets as NCBI (Entrez) Gene IDs | c7.vax.v7.4.entrez.gmt |
| c8: cell type signature gene sets | all cell type signature gene sets as Gene Symbols | c8.all.v7.4.symbols.gmt |
| all cell type signature gene sets as NCBI (Entrez) Gene IDs | c8.all.v7.4.entrez.gmt |
| ZIPped MSigDB v7.4 file set | The MSigDB v7.4 release including all gene set databases and the MSigDB.xml provided as a single ZIP bundle to be used locally if you have firewall / FTP access issues | download
zip file |
| Older versions of MSigDB | Older versions of MSigDB are available from our Archived Downloads page. |