文獻(xiàn)標(biāo)題:Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
該流程可以分為以下五個(gè)部分:
- quality controls
- alignment to a reference genome
- peak calling
- genomic annotation
- generation of raw signal tracks for visualization on the UCSC and IGV genome browsers
詳細(xì)的步驟如下圖所示:
看完整篇文獻(xiàn)對ChIP-seq分析有了一個(gè)整體的認(rèn)識(shí)急迂。不過這篇文獻(xiàn)引用較少高职,說明用這個(gè)流程的人不多,后面再看看有沒有更好的流程。
文獻(xiàn)標(biāo)題:Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis