ls *.sra|while read id;
do
fastq-dump --gzip --split-3 $id;
done
2024-10-24T01:30:22 sam-dump.3.1.1 warn: directory not found while opening manager within virtual file system module - can't open CM000663.2 as a RefSeq or as a WGS
2024-10-24T01:30:22 sam-dump.3.1.1 int: directory not found while opening manager within virtual file system module - VCursorCellDataDirect( row#1 . idx#3 . READ ) read_char_ptr
=============================================================
An error occurred during processing.
A report was generated into the file '/work/home/acwnw4bl7y/ncbi_error_report.txt'.
If the problem persists, you may consider sending the file
to 'sra-tools@ncbi.nlm.nih.gov' for assistance.
=============================================================
sam-dump quit with error code 3
[W::sam_read1] Parse error at line 741
[main_samview] truncated file.
