安裝clusterProfiler
> options()$repos
CRAN
"https://cloud.r-project.org"
> options()$BioC_mirror
NULL
> #options(BioC_mirror="https://mirrors.ustc.edu.cn/bioc/")
> options(BioC_mirror="http://mirrors.tuna.tsinghua.edu.cn/bioconductor/")
> options("repos" = c(CRAN="https://mirrors.tuna.tsinghua.edu.cn/CRAN/"))
> options()$repos
CRAN
"https://mirrors.tuna.tsinghua.edu.cn/CRAN/"
> options()$BioC_mirror
[1] "http://mirrors.tuna.tsinghua.edu.cn/bioconductor/"
> BiocManager::install("clusterProfiler")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories'
for details
replacement repositories:
CRAN: https://mirrors.tuna.tsinghua.edu.cn/CRAN/
Bioconductor version 3.13 (BiocManager 1.30.15), R 4.1.0 (2021-05-18)
Installation paths not writeable, unable to update packages
path: /usr/lib/R/library
packages:
spatial
Warning message:
package(s) not installed when version(s) same as current; use `force = TRUE` to
re-install: 'clusterProfiler'
> #BiocManager::install("clusterProfiler")
> # BiocManager::install("org.Mm.eg.db")
> # BiocManager::install("org.Hs.eg.db")
> library("clusterProfiler")
clusterProfiler v4.0.0 For help: https://guangchuangyu.github.io/software/clusterProfiler
If you use clusterProfiler in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.
Attaching package: ‘clusterProfiler’
The following object is masked from ‘package:stats’:
filter
>
