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IP屬地:云南
  • 您好惑惶,我想請問下計算最后出現(xiàn)這個錯誤,但是我已經(jīng)把終止子刪除了询件,這是什么情況呢杆融?
    5 columns are converted into ??? because of stop codons
    Press Enter to continue
    Sequences read..
    Counting site patterns.. 0:05

    169 patterns at 224 / 224 sites (100.0%), 0:05
    2 ambiguous codons are seen in the data:
    ??? ---
    Counting codons..
    NG distances for seqs.:
    1 2 3 4 5 6 7 8 9 10 11

    440 bytes for distance
    164944 bytes for conP
    0 bytes for fhK
    5000000 bytes for space

    Species 0.9990?

    D:\paml4.7\paml4.7\bin\codeml.exe -- killed

    選擇壓力(dn/ds)計算

    dn/ds又叫ka/ks楞卡,具體的概念,意義百度上都有∑⑿現(xiàn)主要介紹最近用到的三種計算途徑蒋腮,分別是maga7,datamonkey藕各,paml池摧。 做選擇壓力分析的序列文件,需要先c...

  • 老師您好踢京,我出現(xiàn)的問題是明明刪除了終止密碼子,卻提示還包含宦棺,跑出來錯誤。結(jié)果只包含到了每個物種dn/ds的矩陣黔帕,沒有了下面的結(jié)果代咸。請問應(yīng)該怎么處理呢?以下是我的跑的時候錯誤提醒成黄,請您指教一下呐芥,謝謝。

    1708 columns are converted into ??? because of stop codons
    Press Enter to continue
    Sequences read..
    Counting site patterns.. 0:05

    4143 patterns at 6319 / 6319 sites (100.0%), 0:05
    3 ambiguous codons are seen in the data:
    --- ??? ATK
    Counting codons..

    360 bytes for distance
    4043568 bytes for conP
    132576 bytes for fhK
    5000000 bytes for space

    Species 1.0000?

    D:\paml4.7\paml4.7\bin\codeml.exe -- killed

    paml計算dn/ds的小實例

    更新:20190319 使用EasyCodeML完成dnds的計算奋岁,自己嘗試了分支模型和位點模型的計算思瘟,簡直不要太容易! 更新:20190314 教程 http://wiki...

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