下載網(wǎng)址
conda activate hic-pro (python 2.7)
依賴包
libgd (2.0.28 or higher)
bedtools (bedtools or bedtools2)
R / Rscript
Python 2 (numpy,scipy,matplotlib)
###命令
conda install -c anaconda libgd #[Libgd :: Anaconda.org](https://anaconda.org/anaconda/libgd)
conda install -c bioconda perl-gd #[Perl Gd :: Anaconda.org](https://anaconda.org/bioconda/perl-gd)
conda install r-base
conda install bedtools
###檢查
python -V
which R
which bedtools
安裝
#perl -MGD -e 'print $GD::VERSION ."\n";'
perl Build.PL
#Build installdeps
./Build
./Build install
perl software/cworld-dekker/scripts/perl/matrix2insulation.pl
報(bào)錯(cuò)1
Checking prerequisites...
requires:
! GD is not installed
解決1
安裝perl-gd conda install -c bioconda perl-gd
